spatialTIME: Spatial Analysis of Vectra Immunoflourescent Data

Visualization and analysis of Vectra Immunoflourescent data. Options for calculating both the univariate and bivariate Ripley's K are included. Calculations are performed using a permutation-based approach presented by Wilson et al. <doi:10.1101/2021.04.27.21256104>.

Version: 1.3.4-5
Depends: R (≥ 2.10)
Imports: magrittr, dplyr, tidyr, ggplot2, scales, grDevices, purrr, spatstat.univar, spatstat.geom, spatstat.explore, RColorBrewer, furrr, future, tidyselect, crayon, pbmcapply, dixon, tibble, stringr
Suggests: knitr, devtools, rmarkdown, testthat (≥ 3.0.0), gridExtra, pheatmap
Published: 2024-06-04
DOI: NA
Author: Jordan Creed [aut], Ram Thapa [aut], Christopher Wilson [aut], Alex Soupir [aut], Oscar Ospina [aut], Julia Wrobel [aut], Brooke Fridley [cph], Fridley Lab [cre]
Maintainer: Fridley Lab <fridley.lab at moffitt.org>
BugReports: https://github.com/FridleyLab/spatialTIME/issues
License: MIT + file LICENSE
URL: https://github.com/FridleyLab/spatialTIME
NeedsCompilation: no
Citation: spatialTIME citation info
Materials: README
CRAN checks: spatialTIME results

Documentation:

Reference manual: spatialTIME.pdf
Vignettes: Introduction to spatialTIME

Downloads:

Package source: spatialTIME_1.3.4-5.tar.gz
Windows binaries: r-devel: spatialTIME_1.3.4-5.zip, r-release: spatialTIME_1.3.4-5.zip, r-oldrel: spatialTIME_1.3.4-5.zip
macOS binaries: r-release (arm64): spatialTIME_1.3.4-5.tgz, r-oldrel (arm64): spatialTIME_1.3.4-5.tgz, r-release (x86_64): spatialTIME_1.3.4-5.tgz, r-oldrel (x86_64): spatialTIME_1.3.4-5.tgz
Old sources: spatialTIME archive

Reverse dependencies:

Reverse suggests: mxfda, scSpatialSIM

Linking:

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