scPloidy: Infer Ploidy of Single Cells

Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data <>.

Version: 0.6.2
Depends: R (≥ 3.5.0)
Imports: dplyr, GenomicRanges, magrittr, MASS, matrixStats, mixtools, nimble, rlang, Rsamtools, tibble, tidyr, utils
Suggests: gplots, IRanges, knitr, readr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-04-28
DOI: 10.32614/CRAN.package.scPloidy
Author: Fumihiko Takeuchi ORCID iD [aut, cre]
Maintainer: Fumihiko Takeuchi <fumihiko at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: scPloidy results


Reference manual: scPloidy.pdf
Vignettes: CNV


Package source: scPloidy_0.6.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): scPloidy_0.6.2.tgz, r-oldrel (arm64): scPloidy_0.6.2.tgz, r-release (x86_64): scPloidy_0.6.2.tgz, r-oldrel (x86_64): scPloidy_0.6.2.tgz
Old sources: scPloidy archive


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