rSEA: Simultaneous Enrichment Analysis

SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.

Version: 2.1.2
Depends: R (≥ 2.10), hommel (≥ 1.4), ggplot2
Suggests: knitr, rmarkdown
Published: 2024-06-11
DOI: 10.32614/CRAN.package.rSEA
Author: Mitra Ebrahimpoor
Maintainer: Mitra Ebrahimpoor <mitra.ebrahimpoor at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
In views: Omics
CRAN checks: rSEA results


Reference manual: rSEA.pdf
Vignettes: rSEA R package


Package source: rSEA_2.1.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): rSEA_2.1.2.tgz, r-oldrel (arm64): rSEA_2.1.2.tgz, r-release (x86_64): rSEA_2.1.2.tgz, r-oldrel (x86_64): rSEA_2.1.2.tgz
Old sources: rSEA archive

Reverse dependencies:

Reverse suggests: ReporterScore


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