bridger2: Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data

BRIC-seq is a genome-wide approach for determining RNA stability in mammalian cells. This package provides a series of functions for performing quality check of your BRIC-seq data, calculation of RNA half-life for each transcript and comparison of RNA half-lives between two conditions.

Version: 0.1.0
Depends: R (≥ 3.3.1)
Imports: data.table, ggplot2, shiny, shinydashboard, plotly, BSDA, outliers
Suggests: testthat
Published: 2016-12-05
DOI: 10.32614/CRAN.package.bridger2
Author: Naoto Imamachi [aut, cre]
Maintainer: Naoto Imamachi <naoto.imamachi at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: bridger2 results


Reference manual: bridger2.pdf


Package source: bridger2_0.1.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): bridger2_0.1.0.tgz, r-oldrel (arm64): bridger2_0.1.0.tgz, r-release (x86_64): bridger2_0.1.0.tgz, r-oldrel (x86_64): bridger2_0.1.0.tgz


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