Copy-Number Analysis of Large Microarray Data Sets

Methods for analyzing DNA copy-number data. Specifically, this package implements the multi-source copy-number normalization (MSCN) method for normalizing copy-number data obtained on various platforms and technologies. It also implements the TumorBoost method for normalizing paired tumor-normal SNP data.

Version: 1.7.1
Depends: R (≥ 3.1.2), R.utils (≥ 2.11.0), aroma.core (≥ 3.2.2)
Imports: R.methodsS3 (≥ 1.8.1), R.oo (≥ 1.24.0), R.filesets (≥ 2.14.0), R.cache (≥ 0.15.0), matrixStats (≥ 0.61.0), PSCBS (≥ 0.65.0), future.apply
Suggests: aroma.light (≥ 2.2.1), DNAcopy (≥ 1.40.0), GLAD (≥ 1.12.0)
Published: 2024-02-17
DOI: 10.32614/
Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut]
Maintainer: Henrik Bengtsson <henrikb at>
License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
NeedsCompilation: no
Citation: citation info
Materials: NEWS
In views: Omics
CRAN checks: results


Reference manual:


Package source: aroma.cn_1.7.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): aroma.cn_1.7.1.tgz, r-oldrel (arm64): aroma.cn_1.7.1.tgz, r-release (x86_64): aroma.cn_1.7.1.tgz, r-oldrel (x86_64): aroma.cn_1.7.1.tgz
Old sources: archive


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