KOGMWU: Functional Summary and Meta-Analysis of Gene Expression Data

Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.

Version: 1.2
Depends: R (≥ 2.10), pheatmap
Published: 2019-02-19
DOI: 10.32614/CRAN.package.KOGMWU
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz <matz at utexas.edu>
License: GPL-3
NeedsCompilation: no
CRAN checks: KOGMWU results


Reference manual: KOGMWU.pdf


Package source: KOGMWU_1.2.tar.gz
Windows binaries: r-devel: KOGMWU_1.2.zip, r-release: KOGMWU_1.2.zip, r-oldrel: KOGMWU_1.2.zip
macOS binaries: r-release (arm64): KOGMWU_1.2.tgz, r-oldrel (arm64): KOGMWU_1.2.tgz, r-release (x86_64): KOGMWU_1.2.tgz, r-oldrel (x86_64): KOGMWU_1.2.tgz
Old sources: KOGMWU archive


Please use the canonical form https://CRAN.R-project.org/package=KOGMWU to link to this page.