Last updated on 2024-10-14 16:48:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 14.47 | 121.76 | 136.23 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.82 | 86.81 | 97.63 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 233.42 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 180.19 | ERROR | |||
| r-devel-windows-x86_64 | 1.1.4 | 15.00 | 151.00 | 166.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.4 | 14.50 | 112.77 | 127.27 | ERROR | |
| r-release-linux-x86_64 | 1.1.4 | 13.82 | 111.24 | 125.06 | ERROR | |
| r-release-macos-arm64 | 1.1.4 | 131.00 | OK | |||
| r-release-macos-x86_64 | 1.1.4 | 252.00 | OK | |||
| r-release-windows-x86_64 | 1.1.4 | 15.00 | 153.00 | 168.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.4 | 153.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.4 | 237.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.4 | 19.00 | 184.00 | 203.00 | ERROR |
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in ‘refseqR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: refseq_GeneID
> ### Title: Get the GeneID
> ### Aliases: refseq_GeneID
>
> ### ** Examples
>
> # Get the gene symbol from a set of transcript accessions
> transcript = c("XM_004487701", "XM_004488493")
> sapply(transcript, function(x) refseq_GeneID (x, db = "nuccore", retries = 4), USE.NAMES = FALSE)
Error: HTTP failure: 500
{"error":"error forwarding request","api-key":"137.208.57.142","type":"ip",
"status":"ok"}
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
refseq_AAlen 0.357 0.051 6.216
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘refseqR.Rmd’ using rmarkdown
Quitting from lines 62-64 [unnamed-chunk-4] (refseqR.Rmd)
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
HTTP failure: 500
--- failed re-building ‘refseqR.Rmd’
SUMMARY: processing the following file failed:
‘refseqR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in ‘refseqR-Ex.R’ failed
The error most likely occurred in:
> ### Name: refseq_RNA2protein
> ### Title: Get the protein accession from the transcript accession
> ### Aliases: refseq_RNA2protein
>
> ### ** Examples
>
> # Get the protein id from a single transcript accession
> transcript <- "XM_004487701"
> refseq_RNA2protein(transcript)
Error: HTTP failure: 500
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘refseqR.Rmd’ using rmarkdown
Quitting from lines 140-142 [unnamed-chunk-15] (refseqR.Rmd)
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
HTTP failure: 500
--- failed re-building ‘refseqR.Rmd’
SUMMARY: processing the following file failed:
‘refseqR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in 'refseqR-Ex.R' failed
The error most likely occurred in:
> ### Name: refseq_GeneID
> ### Title: Get the GeneID
> ### Aliases: refseq_GeneID
>
> ### ** Examples
>
> # Get the gene symbol from a set of transcript accessions
> transcript = c("XM_004487701", "XM_004488493")
> sapply(transcript, function(x) refseq_GeneID (x, db = "nuccore", retries = 4), USE.NAMES = FALSE)
Error: HTTP failure: 500
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in ‘refseqR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: refseq_GeneID
> ### Title: Get the GeneID
> ### Aliases: refseq_GeneID
>
> ### ** Examples
>
> # Get the gene symbol from a set of transcript accessions
> transcript = c("XM_004487701", "XM_004488493")
> sapply(transcript, function(x) refseq_GeneID (x, db = "nuccore", retries = 4), USE.NAMES = FALSE)
Error: HTTP failure: 500
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in ‘refseqR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: refseq_GeneID
> ### Title: Get the GeneID
> ### Aliases: refseq_GeneID
>
> ### ** Examples
>
> # Get the gene symbol from a set of transcript accessions
> transcript = c("XM_004487701", "XM_004488493")
> sapply(transcript, function(x) refseq_GeneID (x, db = "nuccore", retries = 4), USE.NAMES = FALSE)
Error in curl::curl_fetch_memory(url, handle = handle) :
transfer closed with outstanding read data remaining
Calls: sapply ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in 'refseqR-Ex.R' failed
The error most likely occurred in:
> ### Name: refseq_description
> ### Title: Get the sequence Description
> ### Aliases: refseq_description
>
> ### ** Examples
>
> # Get the sequence descriptions from a set of transcript accessions
> transcript = c("XM_004487701")
> sapply(transcript, function(x) refseq_description(x), USE.NAMES = FALSE)
[1] "aldehyde dehydrogenase 22A1"
>
> # Get the sequence descriptions from a set of protein accessions
> protein = c("XP_004487758")
> sapply(protein, function(x) refseq_description(x), USE.NAMES = FALSE)
Error: HTTP failure: 500
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.1.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'refseqR.Rmd' using rmarkdown
Quitting from lines 113-115 [unnamed-chunk-11] (refseqR.Rmd)
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
HTTP failure: 500
--- failed re-building 'refseqR.Rmd'
SUMMARY: processing the following file failed:
'refseqR.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.1.4
Check: examples
Result: ERROR
Running examples in 'refseqR-Ex.R' failed
The error most likely occurred in:
> ### Name: refseq_GeneID
> ### Title: Get the GeneID
> ### Aliases: refseq_GeneID
>
> ### ** Examples
>
> # Get the gene symbol from a set of transcript accessions
> transcript = c("XM_004487701", "XM_004488493")
> sapply(transcript, function(x) refseq_GeneID (x, db = "nuccore", retries = 4), USE.NAMES = FALSE)
[1] "101512347" "101506901"
>
> # Get the gene symbol from a set of protein accessions
> protein = c("XP_004487758")
> sapply(protein, function(x) refseq_GeneID (x, db = "protein", retries = 4), USE.NAMES = FALSE)
Error: HTTP failure: 500
Execution halted
Flavor: r-oldrel-windows-x86_64