CRAN Package Check Results for Package bigsnpr

Last updated on 2024-07-21 04:53:16 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.12.2 208.33 389.39 597.72 NOTE
r-devel-linux-x86_64-debian-gcc 1.12.2 140.79 308.53 449.32 NOTE
r-devel-linux-x86_64-fedora-clang 1.12.2 817.97 NOTE
r-devel-linux-x86_64-fedora-gcc 1.12.2 834.25 NOTE
r-devel-windows-x86_64 1.12.2 241.00 311.00 552.00 NOTE
r-patched-linux-x86_64 1.12.2 249.25 269.94 519.19 NOTE
r-release-linux-x86_64 1.12.2 161.86 268.09 429.95 NOTE
r-release-macos-arm64 1.12.2 182.00 NOTE
r-release-macos-x86_64 1.12.2 222.00 NOTE
r-release-windows-x86_64 1.12.2 284.00 248.00 532.00 NOTE
r-oldrel-macos-arm64 1.12.2 206.00 NOTE
r-oldrel-macos-x86_64 1.12.2 327.00 NOTE
r-oldrel-windows-x86_64 1.12.2 343.00 307.00 650.00 OK

Check Details

Version: 1.12.2
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: snp_ldsc.html:134:1 (snp_ldsc.Rd:74): Warning: trimming empty <dt> Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 1.12.2
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: LDpred2.Rd: SFBM-class, nb_cores SCT.Rd: FBM.code256-class, nb_cores, big_spLogReg, big_spLinReg bed_MAF.Rd: nb_cores bed_counts.Rd: nb_cores bed_cprodVec.Rd: nb_cores bed_prodVec.Rd: nb_cores bed_projectPCA.Rd: as_scaling_fun, nb_cores bed_projectSelfPCA.Rd: nb_cores bed_randomSVD.Rd: nb_cores bed_scaleBinom.Rd: nb_cores bed_tcrossprodSelf.Rd: as_scaling_fun bigSNP-class.Rd: FBM.code256-class bigsnpr-package.Rd: FBM.code256-class, nb_cores snp_MAF.Rd: FBM.code256-class, nb_cores snp_MAX3.Rd: FBM.code256-class snp_PRS.Rd: FBM.code256-class, big_univLinReg, big_univLogReg snp_asGeneticPos.Rd: nb_cores snp_autoSVD.Rd: FBM.code256-class, as_scaling_fun, nb_cores snp_beagleImpute.Rd: nb_cores snp_clumping.Rd: nb_cores, FBM.code256-class snp_cor.Rd: FBM.code256-class, nb_cores snp_fastImpute.Rd: FBM.code256-class, nb_cores, FBM snp_fastImputeSimple.Rd: FBM.code256-class, nb_cores snp_gc.Rd: big_univLinReg, big_univLogReg snp_lassosum2.Rd: SFBM-class, nb_cores snp_ld_scores.Rd: FBM.code256-class, nb_cores snp_ldsc.Rd: nb_cores, SFBM-class snp_manhattan.Rd: big_univLinReg, big_univLogReg snp_pcadapt.Rd: FBM.code256-class, nb_cores snp_plinkIBDQC.Rd: nb_cores snp_plinkKINGQC.Rd: nb_cores snp_prodBGEN.Rd: nb_cores snp_qq.Rd: big_univLinReg, big_univLogReg snp_readBGEN.Rd: nb_cores snp_readBed.Rd: nb_cores snp_simuPheno.Rd: FBM.code256-class, nb_cores snp_split.Rd: FBM.code256-class, foreach, nb_cores Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Version: 1.12.2
Check: installed package size
Result: NOTE installed size is 8.9Mb sub-directories of 1Mb or more: libs 7.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.12.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘gaston’ Flavor: r-oldrel-macos-x86_64