CRAN Package Check Results for Package ICAMS

Last updated on 2024-07-22 04:48:39 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3.12 57.47 826.31 883.78 OK
r-devel-linux-x86_64-debian-gcc 2.3.12 42.13 667.13 709.26 NOTE
r-devel-linux-x86_64-fedora-clang 2.3.12 1222.61 OK
r-devel-linux-x86_64-fedora-gcc 2.3.12 1080.68 OK
r-devel-windows-x86_64 2.3.12 57.00 566.00 623.00 NOTE
r-patched-linux-x86_64 2.3.12 54.43 832.95 887.38 OK
r-release-linux-x86_64 2.3.12 41.23 860.53 901.76 OK
r-release-macos-arm64 2.3.12 181.00 NOTE
r-release-macos-x86_64 2.3.12 286.00 NOTE
r-release-windows-x86_64 2.3.12 53.00 566.00 619.00 OK
r-oldrel-macos-arm64 2.3.12 197.00 NOTE
r-oldrel-macos-x86_64 2.3.12 419.00 NOTE
r-oldrel-windows-x86_64 2.3.12 71.00 514.00 585.00 NOTE

Check Details

Version: 2.3.12
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: AnnotateDBSVCF.Rd: BSgenome AnnotateSBSVCF.Rd: BSgenome GeneExpressionData.Rd: data.table ICAMS.Rd: BSgenome MutectVCFFilesToCatalog.Rd: BSgenome MutectVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome MutectVCFFilesToZipFile.Rd: BSgenome NormalizeGenomeArg.Rd: BSgenome PlotTransBiasGeneExp.Rd: data.table PlotTransBiasGeneExpToPdf.Rd: data.table StrelkaSBSVCFFilesToCatalog.Rd: BSgenome StrelkaSBSVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome StrelkaSBSVCFFilesToZipFile.Rd: BSgenome VCFsToCatalogs.Rd: BSgenome VCFsToCatalogsAndPlotToPdf.Rd: BSgenome VCFsToDBSCatalogs.Rd: BSgenome VCFsToSBSCatalogs.Rd: BSgenome VCFsToZipFile.Rd: BSgenome revc.Rd: reverseComplement Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64

Version: 2.3.12
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BSgenome.Hsapiens.1000genomes.hs37d5', 'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10' Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 2.3.12
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BSgenome.Hsapiens.1000genomes.hs37d5', 'BSgenome.Mmusculus.UCSC.mm10' Flavor: r-oldrel-windows-x86_64