xQTLbiolinks: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'xQTL'

Enables users-customized data retrieval, processing, analysis, and data visualization of molecular quantitative trait locus and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx' and <http://www.ebi.ac.uk/eqtl/api> of 'eQTL cagalogue'.

Version: 1.6.2
Depends: R (≥ 4.2)
Imports: BiocGenerics, cowplot (≥ 1.1.1), curl (≥ 4.3.2), data.table (≥ 1.14.2), DBI, SummarizedExperiment, GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2 (≥ 3.3.6), ggrepel, IRanges, jsonlite (≥ 1.7.2), viridis, RMySQL, stringr (≥ 1.4.0), utils (≥ 4.0.3)
Suggests: VariantAnnotation, PupillometryR, coloc, knitr, rtracklayer, usethis, ggridges, CMplot, R.utils
Published: 2023-09-14
Author: Ruofan Ding [aut, cre], Xudong Zou [aut, ctb], Yangmei Qin [aut, ctb], Gao Wang [aut, ctb], Lei Li [aut, ctb, cph]
Maintainer: Ruofan Ding <dingruofan1 at foxmail.com>
BugReports: https://github.com/dingruofan/xQTLbiolinks/issues
License: GPL (≥ 3)
URL: https://github.com/dingruofan/xQTLbiolinks
NeedsCompilation: no
Materials: README NEWS
CRAN checks: xQTLbiolinks results


Reference manual: xQTLbiolinks.pdf
Vignettes: Quick_start


Package source: xQTLbiolinks_1.6.2.tar.gz
Windows binaries: r-devel: xQTLbiolinks_1.6.2.zip, r-release: xQTLbiolinks_1.6.2.zip, r-oldrel: xQTLbiolinks_1.6.2.zip
macOS binaries: r-release (arm64): xQTLbiolinks_1.6.2.tgz, r-oldrel (arm64): xQTLbiolinks_1.6.2.tgz, r-release (x86_64): xQTLbiolinks_1.6.2.tgz, r-oldrel (x86_64): xQTLbiolinks_1.6.2.tgz
Old sources: xQTLbiolinks archive


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