treestats: Phylogenetic Tree Statistics

Collection of phylogenetic tree statistics, collected throughout the literature. All functions have been written to maximize computation speed. The package includes umbrella functions to calculate all statistics, all balance associated statistics, or all branching time related statistics. Furthermore, the 'treestats' package supports summary statistic calculations on Ltables, provides speed-improved coding of branching times, Ltable conversion and includes algorithms to create intermediately balanced trees. Full description can be found in Janzen (2023) <doi:10.1101/2024.01.24.576848>.

Version: 1.70.4
Depends: Rcpp
Imports: ape, nloptr
LinkingTo: Rcpp, nloptr
Suggests: phyloTop, testthat, DDD, geiger, nLTT, castor, adephylo, ggplot2, tibble, picante, treebalance, RPANDA, lintr, rmarkdown, knitr, igraph, RSpectra, Matrix, abcrf, pheatmap
Published: 2024-07-17
DOI: 10.32614/CRAN.package.treestats
Author: Thijs Janzen ORCID iD [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen at>
License: GPL-3
NeedsCompilation: yes
Citation: treestats citation info
Materials: README NEWS
In views: Phylogenetics
CRAN checks: treestats results


Reference manual: treestats.pdf
Vignettes: Example: abc
Example: data
Getting started
Speed improvement


Package source: treestats_1.70.4.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): treestats_1.70.4.tgz, r-oldrel (arm64): treestats_1.70.4.tgz, r-release (x86_64): treestats_1.70.4.tgz, r-oldrel (x86_64): treestats_1.70.4.tgz
Old sources: treestats archive

Reverse dependencies:

Reverse imports: secsse


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