tigger: Infers Novel Immunoglobulin Alleles from Sequencing Data

Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>. Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.

Version: 1.0.0
Depends: R (≥ 3.5.0), ggplot2 (≥ 3.2.0)
Imports: alakazam (≥ 1.0.0), shazam (≥ 1.0.0), dplyr (≥ 0.8.1), doParallel, foreach, graphics, gridExtra, gtools, iterators, lazyeval, parallel, rlang, stats, stringi, tidyr (≥ 0.1.0)
Suggests: knitr, rmarkdown, testthat
Published: 2020-05-13
Author: Daniel Gadala-Maria [aut], Susanna Marquez [aut], Moriah Cohen [aut], Jason Vander Heiden [aut, cre], Gur Yaari [aut], Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden at gmail.com>
BugReports: https://bitbucket.org/kleinstein/tigger/issues
License: AGPL-3
URL: http://tigger.readthedocs.io
NeedsCompilation: no
Citation: tigger citation info
Materials: README NEWS
CRAN checks: tigger results


Reference manual: tigger.pdf
Vignettes: Polymorphism detection and genotyping
Package source: tigger_1.0.0.tar.gz
Windows binaries: r-devel: tigger_1.0.0.zip, r-release: tigger_1.0.0.zip, r-oldrel: tigger_1.0.0.zip
macOS binaries: r-release: tigger_1.0.0.tgz, r-oldrel: tigger_1.0.0.tgz
Old sources: tigger archive


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