sequoia: Pedigree Inference from SNPs

Multi-generational pedigree inference from incomplete data on hundreds of SNPs, including parentage assignment and sibship clustering. See Huisman (2017) (<doi:10.1111/1755-0998.12665>) for more information.

Version: 2.11.2
Depends: R (≥ 3.5.0)
Imports: plyr (≥ 1.8.0), stats, utils, graphics, cli
Suggests: openxlsx, knitr, rmarkdown, bookdown, kinship2, R.rsp, hexbin, data.table, vcfR, adegenet
Published: 2024-05-28
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman at gmail.com>
License: GPL-2
URL: https://jiscah.github.io/
NeedsCompilation: yes
SystemRequirements: Fortran95
Citation: sequoia citation info
Materials: NEWS
CRAN checks: sequoia results

Documentation:

Reference manual: sequoia.pdf
Vignettes: PedCompare Example (Griffin Pedigree)
Quick start example 1: Simulated data
Sequoia - Age 'Prior'
Sequoia User Guide
Sequoia flowchart
Mitochondrial haplotypes

Downloads:

Package source: sequoia_2.11.2.tar.gz
Windows binaries: r-devel: sequoia_2.9.0.zip, r-release: sequoia_2.11.1.zip, r-oldrel: sequoia_2.9.0.zip
macOS binaries: r-release (arm64): sequoia_2.9.0.tgz, r-oldrel (arm64): sequoia_2.9.0.tgz, r-release (x86_64): sequoia_2.9.0.tgz, r-oldrel (x86_64): sequoia_2.9.0.tgz
Old sources: sequoia archive

Linking:

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