pedtools 0.9.4

Breaking changes

Another change is that if labs is a function, it is now applied to the pedigree x, not to labels(x). This makes it very easy to apply standard pedigree functions like females(), nonfounders() and typedMembers(), since they can be referred to simply by name: plot(x, labs = females).

Writing files in merlin format (indicated by merlin = TRUE) is internally now done in a separate function. This option is rarely needed by end users, but is called by e.g. pedprobr::likelihoodMerlin().

New features

Given the simplicity of the new syntax I recommend that homozygous genotypes are also written out fully, e.g. s = "B/B" instead of the previous (but still functional) s = "B".

The old swapSex() is often more convenient in practise, since it automatically deals with spouses. One situation where setSex() is the only option, is when one wants to assign unknown sex (sex = 0) to someone.

pedtools 0.9.3

New features

Bug fixes

pedtools 0.9.2

New features

Bug fixes

pedtools 0.9.1

New features

Bug fixes

pedtools 0.9.0