CDMConnector: Connect to an OMOP Common Data Model

Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.

Version: 1.3.1
Depends: R (≥ 4.0)
Imports: dplyr, DBI (≥ 0.3.0), checkmate, dbplyr (≥ 2.4.0), cli, purrr, rlang, tidyselect, readr, glue, waldo, methods, withr, lifecycle, jsonlite, stringr, stringi, fs, generics, tidyr, omopgenerics (≥ 0.0.2)
Suggests: SqlRender, rJava, covr, knitr, rmarkdown, duckdb, RSQLite, RPostgres, odbc, ggplot2, bigrquery, DatabaseConnector, lubridate, tibble, testthat (≥ 3.0.0), pool, snakecase, visR
Enhances: arrow, CirceR, Capr
Published: 2024-04-02
Author: Adam Black ORCID iD [aut, cre], Artem Gorbachev [aut], Edward Burn [aut], Marti Catala Sabate [aut]
Maintainer: Adam Black <black at ohdsi.org>
BugReports: https://github.com/darwin-eu/CDMConnector/issues
License: Apache License (≥ 2)
URL: https://darwin-eu.github.io/CDMConnector/, https://github.com/darwin-eu/CDMConnector
NeedsCompilation: no
Additional_repositories: https://OHDSI.github.io/drat
Materials: README NEWS
CRAN checks: CDMConnector results

Documentation:

Reference manual: CDMConnector.pdf
Vignettes: Getting Started
Working with cohorts
CDMConnector and dbplyr
DBI connection examples
CDM reference backends
Using CDM attributes

Downloads:

Package source: CDMConnector_1.3.1.tar.gz
Windows binaries: r-prerel: CDMConnector_1.3.1.zip, r-release: CDMConnector_1.3.1.zip, r-oldrel: CDMConnector_1.3.1.zip
macOS binaries: r-prerel (arm64): CDMConnector_1.3.1.tgz, r-release (arm64): CDMConnector_1.3.1.tgz, r-oldrel (arm64): CDMConnector_1.3.1.tgz, r-prerel (x86_64): CDMConnector_1.3.1.tgz, r-release (x86_64): CDMConnector_1.3.1.tgz
Old sources: CDMConnector archive

Reverse dependencies:

Reverse imports: CodelistGenerator, CohortSurvival, DrugExposureDiagnostics, DrugUtilisation, IncidencePrevalence, PatientProfiles, TestGenerator
Reverse suggests: TreatmentPatterns

Linking:

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