CACIMAR: Cross-Species Analysis of Cell Identities, Markers and Regulations

A toolkit to perform cross-species analysis based on scRNA-seq data. This package contains 5 main features. (1) identify Markers in each cluster. (2) Cell type annotation (3) identify conserved markers. (4) identify conserved cell types. (5) identify conserved modules of regulatory networks.

Version: 1.0.0
Depends: R (≥ 4.0), Seurat
Imports: pheatmap, pbapply, psych, ROCR, reshape2, dplyr, grDevices, stats, methods, viridisLite
Suggests: knitr, testthat (≥ 3.0.0)
Published: 2022-05-18
DOI: 10.32614/CRAN.package.CACIMAR
Author: Junyao Jiang
Maintainer: Junyao Jiang <jiangjunyao789 at>
License: MIT + file LICENSE
NeedsCompilation: no
CRAN checks: CACIMAR results


Reference manual: CACIMAR.pdf


Package source: CACIMAR_1.0.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): CACIMAR_1.0.0.tgz, r-oldrel (arm64): CACIMAR_1.0.0.tgz, r-release (x86_64): CACIMAR_1.0.0.tgz, r-oldrel (x86_64): CACIMAR_1.0.0.tgz


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