CRAN Package Check Results for Package mpMap2

Last updated on 2020-08-07 15:48:49 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.3 1006.28 347.20 1353.48 OK
r-devel-linux-x86_64-debian-gcc 1.0.3 802.21 257.03 1059.24 OK
r-devel-linux-x86_64-fedora-clang 1.0.3 1903.79 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.3 1753.40 OK
r-devel-windows-ix86+x86_64 1.0.3 2089.00 626.00 2715.00 NOTE
r-patched-linux-x86_64 1.0.3 864.43 337.23 1201.66 OK
r-patched-solaris-x86 1.0.3 1549.80 WARN
r-release-linux-x86_64 1.0.3 844.40 332.20 1176.60 OK
r-release-macos-x86_64 1.0.3 NOTE
r-release-windows-ix86+x86_64 1.0.3 2049.00 704.00 2753.00 NOTE
r-oldrel-macos-x86_64 1.0.3 NOTE
r-oldrel-windows-ix86+x86_64 1.0.3 1420.00 559.00 1979.00 NOTE

Additional issues

clang11

Check Details

Version: 1.0.3
Check: installed package size
Result: NOTE
     installed size is 83.0Mb
     sub-directories of 1Mb or more:
     R 1.1Mb
     libs 79.1Mb
     mathematica 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘mpMap2.Rnw’ using Sweave
    Warning in mpcross(founders = founders, finals = finals, pedigree = pedigreeSF, :
     Removing data for 1 markers, because these markers have NA founder alleles
    Error in validObject(.Object) :
     invalid class “geneticData” object: 1: Coding error for marker D1M3: Founder allele 10 was not present in @hetData[[3]]
    invalid class “geneticData” object: 2: Coding error for marker D1M4: Founder allele 2 was not present in @hetData[[4]]
    invalid class “geneticData” object: 3: Coding error for marker D1M4: Founder allele 3 was not present in @hetData[[4]]
    invalid class “geneticData” object: 4: Coding error for marker D1M4: Founder allele 4 was not present in @hetData[[4]]
    invalid class “geneticData” object: 5: Coding error for marker D1M5: Founder allele 1 was not present in @hetData[[5]]
    invalid class “geneticData” object: 6: Omitting details of further coding errors
    
    Error: processing vignette 'mpMap2.Rnw' failed with diagnostics:
     chunk 23 (label = rfExample)
    Error : C stack usage 342594808 is too close to the limit
    
    
     *** caught segfault ***
    address 5, cause 'memory not mapped'
    Error in parent.frame() :
     'rho' must be an environment not promise: detected in C-level eval
    Calls: <Anonymous> -> message -> parent.frame
    
    Traceback:
     1: parent.frame()
     2: message(gettextf("--- failed re-building %s\n", sQuote(file)))
     3: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests32/mpMap2.Rcheck/vign_test/mpMap2", ser_elibs = "/tmp/RtmpBRaGkc/file4541a213a8b.rds")
    An irrecoverable exception occurred. R is aborting now ...
    Warning: stack imbalance in 'options', 10 then 9
    Warning: stack imbalance in '{', 6 then 3
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘Heatplus’
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64