Last updated on 2023-12-07 04:56:16 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.2.1 | 56.47 | 351.74 | 408.21 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 3.2.1 | 44.19 | 262.36 | 306.55 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 3.2.1 | 532.58 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 3.2.1 | 500.55 | NOTE | |||
| r-devel-windows-x86_64 | 3.2.1 | 54.00 | 295.00 | 349.00 | NOTE | |
| r-patched-linux-x86_64 | 3.2.1 | 69.44 | 348.05 | 417.49 | OK | |
| r-release-linux-x86_64 | 3.2.1 | 49.43 | 352.92 | 402.35 | OK | |
| r-release-macos-arm64 | 3.2.1 | 8.00 | ERROR | |||
| r-release-macos-x86_64 | 3.2.1 | 120.00 | NOTE | |||
| r-release-windows-x86_64 | 3.2.1 | 73.00 | 372.00 | 445.00 | NOTE | |
| r-oldrel-macos-arm64 | 3.2.1 | 110.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 3.2.1 | 140.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 3.2.1 | 76.00 | 335.00 | 411.00 | NOTE |
Version: 3.2.1
Check: Rd files
Result: NOTE
checkRd: (-1) CnPlm.Rd:83-84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) SnpPlm.Rd:65-66: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getAlleleProbePairs.AffymetrixCdfFile.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getAlleleProbePairs.AffymetrixCdfFile.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getAlleleProbePairs3.AffymetrixCdfFile.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) getAlleleProbePairs3.AffymetrixCdfFile.Rd:42: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 3.2.1
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in Rd file 'allocateFromCdf.AromaUnitTabularBinaryFile.Rd':
‘path’ ‘tags’ ‘footer’
Documented arguments not in \usage in Rd file 'byChipType.DChipSnpInformation.Rd':
‘rootPath’ ‘pattern’ ‘verbose’
Documented arguments not in \usage in Rd file 'byChipType.UgpGenomeInformation.Rd':
‘version’
Documented arguments not in \usage in Rd file 'calculateResidualSet.FirmaModel.Rd':
‘verbose’
Documented arguments not in \usage in Rd file 'findByChipType.AromaChipTypeAnnotationFile.Rd':
‘chipType’ ‘tags’
Documented arguments not in \usage in Rd file 'fit.SmoothMultiarrayModel.Rd':
‘data’
Documented arguments not in \usage in Rd file 'getCellIndices.ExonChipEffectFile.Rd':
‘units’
Documented arguments not in \usage in Rd file 'getImage.AffymetrixCelFile.Rd':
‘palette’
Documented arguments not in \usage in Rd file 'getOutputDataSet.Transform.Rd':
‘force’
Documented arguments not in \usage in Rd file 'getUnitTypes.AffymetrixCdfFile.Rd':
‘map’
Documented arguments not in \usage in Rd file 'plotMvsX.AffymetrixCelFile.Rd':
‘xlim’ ‘xlab’
Documented arguments not in \usage in Rd file 'process.BackgroundCorrection.Rd':
‘force’ ‘verbose’
Documented arguments not in \usage in Rd file 'readUnits.CnagCfhFile.Rd':
‘cdf’
Documented arguments not in \usage in Rd file 'setArrays.ArrayExplorer.Rd':
‘arrays’
Documented arguments not in \usage in Rd file 'setRestructor.AffymetrixCdfFile.Rd':
‘units’
Documented arguments not in \usage in Rd file 'setupExampleData.Rd':
‘dirs’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 3.2.1
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
R 2.3Mb
help 1.2Mb
testScripts 1.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 3.2.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘aroma.core’
Packages suggested but not available for checking:
'affxparser', 'aroma.light', 'oligo', 'oligoClasses',
'pdInfoBuilder', 'AffymetrixDataTestFiles'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 3.2.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder',
'AffymetrixDataTestFiles'
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 3.2.1
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64